Transcript: ENSDART00000054925.7 pcnp-201

Description

PEST proteolytic signal containing nuclear protein [Source:ZFIN;Acc:ZDB-GENE-041010-130]

Gene Synonyms

zgc:103440

Location

Chromosome 1: 7,556,977-7,561,221 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 323 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000037713.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000146682.3	pcnp-206	951	173aa	ENSDARP00000113543.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JKI0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000054925.7	pcnp-201	1142	102aa	ENSDARP00000054924.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5XJC4	-
ENSDART00000184465.1	pcnp-207	1087	164aa	ENSDARP00000153830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QL91	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000101586.6	pcnp-202	996	163aa	ENSDARP00000092359.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JKH9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000140189.3	pcnp-204	849	102aa	ENSDARP00000113454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5XJC4	-
ENSDART00000134213.2	pcnp-203	516	92aa	ENSDARP00000117647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000146238.2	pcnp-205	796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,142 bps, Translation length: 102 residues

Version

ENSDART00000054925.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000054925.7 pcnp-201

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Transcript: ENSDART00000054925.7 pcnp-201

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