Transcript: ENSDART00000053685.6 smox-201

Description

spermine oxidase [Source:ZFIN;Acc:ZDB-GENE-031201-3]

Gene Synonyms

cb1027, wu:fq32f10, zgc:77167

Location

About this transcript

This transcript has 7 exons, is annotated with 9 domains and features, is associated with 7 variant alleles and maps to 280 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000053685.6	smox-201	2220	539aa	ENSDARP00000053684.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A458	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000192672.1	smox-206	568	182aa	ENSDARP00000145065.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803H9	-
ENSDART00000148388.2	smox-205	965	216aa	ENSDARP00000124113.1	Nonsense mediated decay	F8W4W6	-
ENSDART00000145170.2	smox-204	836	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000136879.3	smox-203	774	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000124874.4	smox-202	1902	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,220 bps, Translation length: 539 residues

Version

ENSDART00000053685.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.