Transcript: ENSDART00000053334.7 nitr3a-202

Description

novel immune-type receptor 3a [Source:ZFIN;Acc:ZDB-GENE-001106-8]

Gene Synonyms

SI:dZ213M14.2, dZ169I8.8, nitr, nitr3.1, nitr3.2, nitr3.3, nitr3.4, nitr3.6, nitr3.7, nitr3.9, nitr3a_4, nitr3a_6, si:busm1-221h6.4, si:dz221h6.4

Location

Chromosome 7: 17,415,388-17,416,092 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 389 variant alleles and maps to 91 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000077998.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000163020.2	nitr3a-204	1282	365aa	ENSDARP00000136702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000160327.2	nitr3a-203	1352	337aa	ENSDARP00000131855.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q90Z88	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000043689.6	nitr3a-201	1014	337aa	ENSDARP00000043688.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000053334.7	nitr3a-202	378	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 378 bps,

Version

ENSDART00000053334.7

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000053334.7 nitr3a-202

Summary

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Transcript: ENSDART00000053334.7 nitr3a-202

Summary

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