Transcript: ENSDART00000052645.8 tsr1-201

Description

TSR1 ribosome maturation factor [Source:ZFIN;Acc:ZDB-GENE-030131-3762]

Gene Synonyms

fc52b09, wu:fc52b09, zgc:123319

Location

Chromosome 15: 25,635,327-25,656,327 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 22 domains and features, is associated with 723 variant alleles and maps to 279 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000007744.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052645.8	tsr1-201	2653	836aa	ENSDARP00000052644.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FCX4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000162240.2	tsr1-204	2616	822aa	ENSDARP00000136648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IKX4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000135409.3	tsr1-202	1801	476aa	ENSDARP00000116271.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000149256.2	tsr1-203	1547	351aa	ENSDARP00000123769.1	Nonsense mediated decay	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,653 bps, Translation length: 836 residues

Version

ENSDART00000052645.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000052645.8 tsr1-201

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Transcript: ENSDART00000052645.8 tsr1-201

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