Transcript: ENSDART00000052641.5 gatm-201

Description

glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]

Gene Synonyms

agat, cb409, wu:fa08a06

Location

Chromosome 18: 35,725-46,010 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 6 domains and features, is associated with 334 variant alleles and maps to 292 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000036239.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000052641.5	gatm-201	1974	422aa	ENSDARP00000052640.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148373.2	gatm-202	872	272aa	ENSDARP00000123872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148950.1	gatm-205	829	258aa	ENSDARP00000124368.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148821.1	gatm-204	729	113aa	ENSDARP00000124158.1	Nonsense mediated decay	-
ENSDART00000148453.1	gatm-203	856	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,974 bps, Translation length: 422 residues

Version

ENSDART00000052641.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000052641.5 gatm-201

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Transcript: ENSDART00000052641.5 gatm-201

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