Transcript: ENSDART00000052569.7 pitx2-201

Description

paired-like homeodomain 2 [Source:ZFIN;Acc:ZDB-GENE-990714-27]

Gene Synonyms

pitx2a, pitx2b, pitx2c, zgc:110508, zpitx2c

Location

Chromosome 14: 36,226,243-36,229,796 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 22 domains and features, is associated with 152 variant alleles and maps to 251 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000036194.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052569.7	pitx2-201	1947	314aa	ENSDARP00000052568.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W5Z2-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000186872.1	pitx2-206	2880	269aa	ENSDARP00000149868.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148319.4	pitx2-203	1887	269aa	ENSDARP00000120155.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181864.1	pitx2-205	1721	269aa	ENSDARP00000156780.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000137652.2	pitx2-202	804	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000173243.2	pitx2-204	488	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,947 bps, Translation length: 314 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9W5Z2

Version

ENSDART00000052569.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000052569.7 pitx2-201

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Transcript: ENSDART00000052569.7 pitx2-201

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