Transcript: ENSDART00000052471.5 bbox1-201

Description

butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 [Source:ZFIN;Acc:ZDB-GENE-050417-218]

Gene Synonyms

wu:fj14g08, zgc:112179

Location

Chromosome 7: 34,296,789-34,312,434 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 521 variant alleles and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000036135.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052471.5	bbox1-201	2196	325aa	ENSDARP00000052470.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000173798.2	bbox1-205	2612	433aa	ENSDARP00000142742.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSC9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180342.1	bbox1-206	1445	433aa	ENSDARP00000147754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSC9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173778.2	bbox1-204	781	200aa	ENSDARP00000142900.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173575.2	bbox1-202	351	93aa	ENSDARP00000142760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000173713.2	bbox1-203	395	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,196 bps, Translation length: 325 residues

Version

ENSDART00000052471.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000052471.5 bbox1-201

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Transcript: ENSDART00000052471.5 bbox1-201

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