Transcript: ENSDART00000052355.6 ddx39b-201

Description

DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:ZFIN;Acc:ZDB-GENE-040426-1259]

Location

About this transcript

This transcript has 11 exons, is annotated with 15 domains and features, is associated with 401 variant alleles and maps to 171 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052355.6	ddx39b-201	1928	435aa	ENSDARP00000052354.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SXU7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000184687.1	ddx39b-203	2708	435aa	ENSDARP00000144813.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SXU7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149515.2	ddx39b-202	413	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,928 bps, Translation length: 435 residues

Version

ENSDART00000052355.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.