Transcript: ENSDART00000052169.7 sync-201

Description

syncoilin, intermediate filament protein [Source:ZFIN;Acc:ZDB-GENE-060503-747]

Location

Chromosome 19: 30,990,129-30,997,794 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 462 variant alleles and maps to 163 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000035944.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052169.7	sync-201	2838	451aa	ENSDARP00000052168.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RA90	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000193376.1	sync-203	4309	396aa	ENSDARP00000144886.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000134645.2	sync-202	807	242aa	ENSDARP00000123197.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,838 bps, Translation length: 451 residues

Version

ENSDART00000052169.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000052169.7 sync-201

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Transcript: ENSDART00000052169.7 sync-201

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