Transcript: ENSDART00000052124.6 fam49al-201

Description

family with sequence similarity 49 member A, like [Source:ZFIN;Acc:ZDB-GENE-040801-125]

Gene Synonyms

fam49a, fam49aa, zgc:100996

Location

About this transcript

This transcript has 12 exons, is annotated with 6 domains and features, is associated with 1108 variant alleles and maps to 200 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052124.6	fam49al-201	3465	323aa	ENSDARP00000052123.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DC29	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000175662.2	fam49al-202	4184	324aa	ENSDARP00000144084.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M6YUH1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 12, Coding exons: 10, Transcript length: 3,465 bps, Translation length: 323 residues

Version

ENSDART00000052124.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.