Transcript: ENSDART00000051779.4 atg4c-201

Description

autophagy related 4C, cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-040625-84]

Gene Synonyms

apg4c, atg4cl, wu:fc56g07, zgc:86888

Location

About this transcript

This transcript has 11 exons, is annotated with 4 domains and features, is associated with 372 variant alleles and maps to 259 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000051779.4	atg4c-201	3011	463aa	ENSDARP00000051778.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IQ96	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000127879.4	atg4c-202	4077	463aa	ENSDARP00000107294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IQ96	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148159.2	atg4c-203	734	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 3,011 bps, Translation length: 463 residues

Version

ENSDART00000051779.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.