Transcript: ENSDART00000051185.7 srsf7a-201

Description

serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]

Gene Synonyms

fb39b02, wu:fb39b02, zgc:77155

Location

Chromosome 5: 36,895,586-36,899,144 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 23 domains and features, is associated with 250 variant alleles and maps to 349 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000035325.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135776.3	srsf7a-206	1465	258aa	ENSDARP00000121453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P0K2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000051185.7	srsf7a-201	1407	258aa	ENSDARP00000051184.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P0K2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133842.3	srsf7a-204	952	245aa	ENSDARP00000115725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BHB2	-
ENSDART00000134493.3	srsf7a-205	873	240aa	ENSDARP00000113600.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147561.3	srsf7a-210	859	189aa	ENSDARP00000117198.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000141984.3	srsf7a-208	851	226aa	ENSDARP00000113076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151984.2	srsf7a-212	778	185aa	ENSDARP00000126430.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000142388.3	srsf7a-209	745	176aa	ENSDARP00000122833.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136301.3	srsf7a-207	501	94aa	ENSDARP00000120084.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147803.3	srsf7a-211	724	73aa	ENSDARP00000126378.1	Nonsense mediated decay	-	-
ENSDART00000152044.3	srsf7a-213	875	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000131303.3	srsf7a-202	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000132912.2	srsf7a-203	516	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 1,407 bps, Translation length: 258 residues

Version

ENSDART00000051185.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000051185.7 srsf7a-201

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Transcript: ENSDART00000051185.7 srsf7a-201

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