Transcript: ENSDART00000050481.5 ikzf1-204

Description

IKAROS family zinc finger 1 (Ikaros) [Source:ZFIN;Acc:ZDB-GENE-980526-304]

Gene Synonyms

ikaros, znfn1a1

Location

Chromosome 13: 15,958,182-15,994,419 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 28 domains and features, is associated with 351 variant alleles and maps to 327 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000013539.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000079724.4	ikzf1-205	1915	526aa	ENSDARP00000074176.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000181072.1	ikzf1-206	2530	516aa	ENSDARP00000150749.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000016430.7	ikzf1-201	2301	537aa	ENSDARP00000013960.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000186911.1	ikzf1-207	2254	424aa	ENSDARP00000151091.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000050481.5	ikzf1-204	1639	434aa	ENSDARP00000050480.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000189394.1	ikzf1-208	1614	537aa	ENSDARP00000151737.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000046079.5	ikzf1-203	1513	392aa	ENSDARP00000046078.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000042377.5	ikzf1-202	1219	294aa	ENSDARP00000042376.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,639 bps, Translation length: 434 residues

Version

ENSDART00000050481.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000050481.5 ikzf1-204

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000050481.5 ikzf1-204

Summary

About Us

Get help

Our sister sites

Follow us