Transcript: ENSDART00000050379.9 kdm7ab-201

Description

lysine (K)-specific demethylase 7Ab [Source:ZFIN;Acc:ZDB-GENE-050309-32]

Gene Synonyms

im:7141664, jhdm1D, jhdm1db, kdm7b

Location

Chromosome 25: 17,244,532-17,310,301 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 30 domains and features, is associated with 1483 variant alleles and maps to 202 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000018559.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000050379.9	kdm7ab-201	4852	919aa	ENSDARP00000050378.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QHF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000171322.2	kdm7ab-204	3457	894aa	ENSDARP00000138449.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000155510.2	kdm7ab-203	264	41aa	ENSDARP00000127924.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000155482.2	kdm7ab-202	1045	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 4,852 bps, Translation length: 919 residues

Version

ENSDART00000050379.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000050379.9 kdm7ab-201

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Transcript: ENSDART00000050379.9 kdm7ab-201

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