Transcript: ENSDART00000048640.8 pus3-201

Description

pseudouridylate synthase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9433]

Gene Synonyms

fj78b12, wu:fj78b12, zgc:56653

Location

About this transcript

This transcript has 7 exons, is annotated with 17 domains and features, is associated with 382 variant alleles and maps to 84 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000048640.8	pus3-201	1860	460aa	ENSDARP00000048639.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QBS4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000156096.2	pus3-204	722	191aa	ENSDARP00000127947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WCK3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000154242.2	pus3-202	854	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000154803.2	pus3-203	650	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,860 bps, Translation length: 460 residues

Version

ENSDART00000048640.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.