Transcript: ENSDART00000048445.7 mhc1zea-201

Description

major histocompatibility complex class I ZEA [Source:ZFIN;Acc:ZDB-GENE-070705-176]

Gene Synonyms

si:ch211-287j19.6, zgc:162351

Location

About this transcript

This transcript has 3 exons, is associated with 19 variant alleles and maps to 129 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000101143.5	mhc1zea-202	2047	350aa	ENSDARP00000091917.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E7F2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000176803.2	mhc1zea-204	1138	326aa	ENSDARP00000144516.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YP14	-
ENSDART00000159925.2	mhc1zea-203	1020	340aa	ENSDARP00000133292.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000048445.7	mhc1zea-201	960	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 960 bps,

Version

ENSDART00000048445.7

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.