Transcript: ENSDART00000047159.7 hmgb2a-201

Description

high mobility group box 2a [Source:ZFIN;Acc:ZDB-GENE-051120-126]

Gene Synonyms

hmgb2, wu:fb22b10, wu:fc95d12, zgc:123215

Location

Chromosome 1: 38,169,512-38,171,787 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 25 domains and features, is associated with 16 variant alleles and maps to 152 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000029722.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000047159.7	hmgb2a-201	1237	213aa	ENSDARP00000047158.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1N808	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000137451.2	hmgb2a-202	862	174aa	ENSDARP00000123575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000142811.2	hmgb2a-204	377	91aa	ENSDARP00000114997.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142060.2	hmgb2a-203	269	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,237 bps, Translation length: 213 residues

Version

ENSDART00000047159.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000047159.7 hmgb2a-201

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Transcript: ENSDART00000047159.7 hmgb2a-201

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