Transcript: ENSDART00000046274.6 trappc13-201

Description

trafficking protein particle complex subunit 13 [Source:ZFIN;Acc:ZDB-GENE-030131-9775]

Gene Synonyms

cb318, sb:cb318, wu:fa04a08, zgc:73187

Location

About this transcript

This transcript has 12 exons, is annotated with 5 domains and features, is associated with 1052 variant alleles and maps to 190 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000046274.6	trappc13-201	1681	412aa	ENSDARP00000046273.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PBY7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000168909.2	trappc13-202	1938	418aa	ENSDARP00000135625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMM3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,681 bps, Translation length: 412 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6PBY7

Version

ENSDART00000046274.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.