Transcript: ENSDART00000045249.6 scg5-201

Description

secretogranin V [Source:ZFIN;Acc:ZDB-GENE-040426-1687]

Gene Synonyms

zgc:73132

Location

Chromosome 20: 29,471,806-29,474,936 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 35 variant alleles and maps to 189 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000032126.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000152906.2	scg5-202	980	219aa	ENSDARP00000127419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PC28	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000183164.1	scg5-204	2207	219aa	ENSDARP00000157633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PC28	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000045249.6	scg5-201	975	219aa	ENSDARP00000045248.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PC28	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000153237.2	scg5-203	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 975 bps, Translation length: 219 residues

Version

ENSDART00000045249.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000045249.6 scg5-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000045249.6 scg5-201

Summary

About Us

Get help

Our sister sites

Follow us