Transcript: ENSDART00000043516.7 mfap4.12-201

Description

microfibril associated protein 4, tandem duplicate 12 [Source:ZFIN;Acc:ZDB-GENE-110408-35]

Gene Synonyms

si:zfos-2330d3.1

Location

Chromosome 1: 59,075,795-59,077,650 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 17 domains and features, is associated with 300 variant alleles and maps to 59 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000038683.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000043516.7	mfap4.12-201	976	247aa	ENSDARP00000043515.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RA44	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000191532.1	mfap4.12-204	1427	242aa	ENSDARP00000147312.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000132495.3	mfap4.12-202	732	243aa	ENSDARP00000122958.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000149837.2	mfap4.12-203	1056	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 976 bps, Translation length: 247 residues

Version

ENSDART00000043516.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000043516.7 mfap4.12-201

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Transcript: ENSDART00000043516.7 mfap4.12-201

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