Transcript: ENSDART00000042588.8 zfyve21-201

Description

zinc finger, FYVE domain containing 21 [Source:ZFIN;Acc:ZDB-GENE-030131-1296]

Gene Synonyms

fb66b01, wu:fb66b01

Location

Chromosome 13: 43,639,867-43,659,541 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 586 variant alleles and maps to 201 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000027887.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000042588.8	zfyve21-201	1447	226aa	ENSDARP00000042587.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A6I1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000074728.7	zfyve21-202	1418	243aa	ENSDARP00000069214.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A6I2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000141024.2	zfyve21-206	407	103aa	ENSDARP00000118729.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKQ6	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000132458.3	zfyve21-204	649	48aa	ENSDARP00000120627.1	Nonsense mediated decay	E9QJE7	-
ENSDART00000074738.6	zfyve21-203	928	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000140473.2	zfyve21-205	835	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,447 bps, Translation length: 226 residues

Version

ENSDART00000042588.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000042588.8 zfyve21-201

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Transcript: ENSDART00000042588.8 zfyve21-201

Summary

About Us

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