Transcript: ENSDART00000042060.5 jade1-201

Description

jade family PHD finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5648]

Gene Synonyms

fi11a04, phf17, wu:fi11a04, zgc:55323

Location

Chromosome 17: 26,828,027-26,848,018 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 34 domains and features, is associated with 124 variant alleles and maps to 207 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000033707.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000042060.5	jade1-201	3842	829aa	ENSDARP00000042059.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QA19	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181269.1	jade1-205	6264	829aa	ENSDARP00000152238.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QA19	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000143852.2	jade1-203	796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000151869.2	jade1-204	736	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000136971.2	jade1-202	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 3,842 bps, Translation length: 829 residues

Version

ENSDART00000042060.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000042060.5 jade1-201

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Transcript: ENSDART00000042060.5 jade1-201

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