Transcript: ENSDART00000041787.9 trim35-28-201

Description

tripartite motif containing 35-28 [Source:ZFIN;Acc:ZDB-GENE-071004-19]

Gene Synonyms

zgc:171672

Location

About this transcript

This transcript has 6 exons, is annotated with 31 domains and features, is associated with 12 variant alleles and maps to 132 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000041787.9	trim35-28-201	3735	477aa	ENSDARP00000041786.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJY4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000143073.2	trim35-28-204	814	176aa	ENSDARP00000123172.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QES2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000131540.2	trim35-28-202	533	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000132413.2	trim35-28-203	503	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,735 bps, Translation length: 477 residues

Version

ENSDART00000041787.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.