Transcript: ENSDART00000041441.6 STIP1-203

Description

stress-induced phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-041121-17]

Location

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 396 variant alleles and maps to 38 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000112488.4	STIP1-201	2462	542aa	ENSDARP00000100503.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RKM3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000041441.6	STIP1-203	730	159aa	ENSDARP00000041440.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149379.2	STIP1-202	653	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 730 bps, Translation length: 159 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000041441.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.