Transcript: ENSDART00000041300.7 esr2b-201

Description

estrogen receptor 2b [Source:ZFIN;Acc:ZDB-GENE-030116-1]

Gene Synonyms

ER[b]1, ERbeta-A, NR3A2-A, zfER[b]1

Location

Chromosome 13: 37,022,632-37,072,344 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 32 domains and features, is associated with 832 variant alleles and maps to 268 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000034181.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000131800.3	esr2b-203	2770	592aa	ENSDARP00000118673.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JJL3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000063412.5	esr2b-202	2700	592aa	ENSDARP00000063411.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JJL3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000041300.7	esr2b-201	2549	600aa	ENSDARP00000041299.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M2B359	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000147196.2	esr2b-205	921	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000141570.2	esr2b-204	533	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,549 bps, Translation length: 600 residues

Version

ENSDART00000041300.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000041300.7 esr2b-201

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Transcript: ENSDART00000041300.7 esr2b-201

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