Transcript: ENSDART00000040449.7 htr1fa-202

Description

5-hydroxytryptamine (serotonin) receptor 1Fa [Source:ZFIN;Acc:ZDB-GENE-081105-125]

Gene Synonyms

si:ch211-277p15.2

Location

Chromosome 9: 19,304,697-19,305,712 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 32 domains and features, is associated with 44 variant alleles and maps to 221 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000109862.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000185312.1	htr1fa-203	4633	363aa	ENSDARP00000157642.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QUF3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000040449.7	htr1fa-202	1016	339aa	ENSDARP00000040448.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QU42	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 1,016 bps, Translation length: 339 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000040449.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000040449.7 htr1fa-202

Summary

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Transcript: ENSDART00000040449.7 htr1fa-202

Summary

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