Transcript: ENSDART00000040191.6 snx17-201

Description

sorting nexin 17 [Source:ZFIN;Acc:ZDB-GENE-030131-9475]

Gene Synonyms

si:ch211-101l18.2, wu:fb67g03, wu:fb67g09, wu:fc27g08, wu:fj81d04

Location

About this transcript

This transcript has 15 exons, is annotated with 20 domains and features, is associated with 1381 variant alleles and maps to 295 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000040191.6	snx17-201	4379	473aa	ENSDARP00000040190.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RID7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000168521.2	snx17-202	3445	472aa	ENSDARP00000137695.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ITX6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 4,379 bps, Translation length: 473 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5RID7

Version

ENSDART00000040191.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.