Transcript: ENSDART00000039968.6 MDH1-203

Description

malate dehydrogenase 1Aa, NAD (soluble) [Source:ZFIN;Acc:ZDB-GENE-040204-1]

Location

Chromosome 1: 50,977,554-50,983,939 forward strand.

About this transcript

This transcript has 3 exons, is associated with 367 variant alleles and maps to 17 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000017772.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000022290.11	MDH1-201	1472	333aa	ENSDARP00000023121.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q801E6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000012842.9	MDH1-206	1714	350aa	ENSDARP00000015862.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R9YJL1	-
ENSDART00000150353.3	MDH1-205	689	113aa	ENSDARP00000125163.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000140657.2	MDH1-204	507	74aa	ENSDARP00000116018.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000140982.2	MDH1-202	363	46aa	ENSDARP00000120477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000039968.6	MDH1-203	514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 514 bps,

Version

ENSDART00000039968.6

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000039968.6 MDH1-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000039968.6 MDH1-203

Summary

About Us

Get help

Our sister sites

Follow us