Transcript: ENSDART00000039657.9 tpma-201

Description

alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]

Gene Synonyms

TPM1-2 alpha, fb37a09, tm, tropomyosin alpha chain, wu:fb37a09

Location

Chromosome 7: 29,952,355-29,960,350 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 12 domains and features, is associated with 372 variant alleles and maps to 215 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000033683.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000173453.2	tpma-202	3089	284aa	ENSDARP00000142967.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P13104	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000039657.9	tpma-201	812	205aa	ENSDARP00000039656.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000173906.2	tpma-209	753	209aa	ENSDARP00000142950.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173904.2	tpma-208	751	221aa	ENSDARP00000142715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173540.2	tpma-204	721	178aa	ENSDARP00000142649.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000173940.2	tpma-210	639	171aa	ENSDARP00000142778.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173772.2	tpma-207	631	171aa	ENSDARP00000142761.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173506.2	tpma-203	529	135aa	ENSDARP00000142952.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000173686.2	tpma-205	487	162aa	ENSDARP00000142833.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000173737.2	tpma-206	402	134aa	ENSDARP00000142776.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 812 bps, Translation length: 205 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000039657.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000039657.9 tpma-201

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Transcript: ENSDART00000039657.9 tpma-201

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