Transcript: ENSDART00000038038.6 SEM1-202

Description

SEM1 26S proteasome subunit [Source:ZFIN;Acc:ZDB-GENE-030131-988]

Location

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 214 variant alleles and maps to 310 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000038038.6	SEM1-202	1475	92aa	ENSDARP00000030382.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000167772.2	SEM1-201	644	71aa	ENSDARP00000130746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000172350.2	SEM1-203	358	90aa	ENSDARP00000137837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,475 bps, Translation length: 92 residues

Version

ENSDART00000038038.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.