Transcript: ENSDART00000036871.7 si:ch211-121a2.4-201

Description

si:ch211-121a2.4 [Source:ZFIN;Acc:ZDB-GENE-070705-23]

Location

Chromosome 20: 7,122,590-7,128,713 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 17 domains and features, is associated with 507 variant alleles and maps to 217 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000028541.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000036871.7	si:ch211-121a2.4-201	741	200aa	ENSDARP00000036246.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EXU5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000146755.3	si:ch211-121a2.4-202	703	180aa	ENSDARP00000119914.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000160910.2	si:ch211-121a2.4-203	576	191aa	ENSDARP00000133989.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 741 bps, Translation length: 200 residues

Version

ENSDART00000036871.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000036871.7 si:ch211-121a2.4-201

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Transcript: ENSDART00000036871.7 si:ch211-121a2.4-201

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