Transcript: ENSDART00000036090.7 pdlim5b-201

Description

PDZ and LIM domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-908]

Gene Synonyms

zgc:56116, zgc:86712

Location

About this transcript

This transcript has 12 exons, is annotated with 39 domains and features, is associated with 135 variant alleles and maps to 115 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000169779.2	pdlim5b-203	2262	628aa	ENSDARP00000137887.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QSU4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000036090.7	pdlim5b-201	1902	628aa	ENSDARP00000035494.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QSU4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000168127.2	pdlim5b-202	594	197aa	ENSDARP00000139485.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IS44	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,902 bps, Translation length: 628 residues

Version

ENSDART00000036090.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.