Transcript: ENSDART00000035538.8 ptp4a3a-201

Description

protein tyrosine phosphatase 4A3a [Source:ZFIN;Acc:ZDB-GENE-040426-2220]

Gene Synonyms

PRL-3, ptp4a3, wu:fc54b05, wu:fv52d11, zgc:77109

Location

Chromosome 19: 25,089,239-25,113,660 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 499 variant alleles and maps to 215 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000039997.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000035538.8	ptp4a3a-201	1887	173aa	ENSDARP00000039012.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NX92	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000175266.2	ptp4a3a-208	3015	173aa	ENSDARP00000144460.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NX92	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162917.2	ptp4a3a-207	2943	173aa	ENSDARP00000135356.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NX92	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149035.3	ptp4a3a-204	830	120aa	ENSDARP00000124887.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148432.3	ptp4a3a-202	699	74aa	ENSDARP00000124859.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148953.2	ptp4a3a-203	639	61aa	ENSDARP00000123957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149239.2	ptp4a3a-205	776	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000150161.2	ptp4a3a-206	819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,887 bps, Translation length: 173 residues

Version

ENSDART00000035538.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000035538.8 ptp4a3a-201

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Transcript: ENSDART00000035538.8 ptp4a3a-201

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