Transcript: ENSDART00000034883.9 MCF2-201

Description

MCF.2 cell line derived transforming sequence a [Source:ZFIN;Acc:ZDB-GENE-030616-52]

Location

About this transcript

This transcript has 30 exons, is annotated with 34 domains and features, is associated with 1644 variant alleles and maps to 193 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000034883.9	MCF2-201	5149	1111aa	ENSDARP00000029313.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q4X6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180391.1	MCF2-203	6769	811aa	ENSDARP00000148352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000148830.2	MCF2-202	568	183aa	ENSDARP00000124326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000186724.1	MCF2-204	471	126aa	ENSDARP00000150853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 30, Coding exons: 30, Transcript length: 5,149 bps, Translation length: 1,111 residues

Version

ENSDART00000034883.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]