Transcript: ENSDART00000034536.7 rab5c-201

Description

RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]

Gene Synonyms

wu:fb98b08, wu:fi16g01

Location

About this transcript

This transcript has 6 exons, is annotated with 22 domains and features, is associated with 680 variant alleles and maps to 173 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000034536.7	rab5c-201	2264	221aa	ENSDARP00000033828.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZVP2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000156775.2	rab5c-202	747	80aa	ENSDARP00000128672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WEM1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000191833.1	rab5c-203	685	221aa	ENSDARP00000156922.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZVP2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,264 bps, Translation length: 221 residues

Version

ENSDART00000034536.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.