Transcript: ENSDART00000033970.7 ubr4-201

Description

ubiquitin protein ligase E3 component n-recognin 4 [Source:ZFIN;Acc:ZDB-GENE-090313-341]

Gene Synonyms

si:dkey-7c22.2

Location

About this transcript

This transcript has 104 exons, is annotated with 50 domains and features, is associated with 2491 variant alleles and maps to 569 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000156701.3	ubr4-204	15519	5172aa	ENSDARP00000128666.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WEL5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000033970.7	ubr4-201	15869	5129aa	ENSDARP00000034465.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R984	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000145151.2	ubr4-203	939	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000131914.2	ubr4-202	766	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 104, Coding exons: 104, Transcript length: 15,869 bps, Translation length: 5,129 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000033970.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.