Transcript: ENSDART00000032821.9 cyth1b-201

Description

cytohesin 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4311]

Gene Synonyms

fc89h04, wu:fc89h04, zgc:73134

Location

Chromosome 12: 34,119,439-34,192,955 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 19 domains and features, is associated with 1127 variant alleles and maps to 167 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000021488.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000032821.9	cyth1b-201	2263	399aa	ENSDARP00000029832.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R9I9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000180969.1	cyth1b-205	1734	396aa	ENSDARP00000157215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QTS0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000153413.2	cyth1b-204	615	80aa	ENSDARP00000127275.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JAK7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000153276.3	cyth1b-202	602	157aa	ENSDARP00000127375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JAV6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000153314.2	cyth1b-203	806	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,263 bps, Translation length: 399 residues

Version

ENSDART00000032821.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000032821.9 cyth1b-201

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Transcript: ENSDART00000032821.9 cyth1b-201

Summary

About Us

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