Transcript: ENSDART00000031547.6 smndc1-201

Description

survival motor neuron domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-614]

Gene Synonyms

TDRD10, spf30, wu:fb37h07, wu:fc23a07

Location

About this transcript

This transcript has 6 exons, is annotated with 18 domains and features, is associated with 557 variant alleles and maps to 211 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000031547.6	smndc1-201	1440	237aa	ENSDARP00000038215.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GRC5 Q7ZV80	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180115.1	smndc1-202	2152	237aa	ENSDARP00000146987.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GRC5 Q7ZV80	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,440 bps, Translation length: 237 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7ZV80

Version

ENSDART00000031547.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.