Transcript: ENSDART00000030009.7 si:dkey-172h23.2-201

Description

si:dkey-172h23.2 [Source:ZFIN;Acc:ZDB-GENE-141212-258]

Gene Synonyms

zgc:73349

Location

Chromosome 7: 15,214,910-15,252,441 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 781 variant alleles and maps to 70 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000023868.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000173072.2	si:dkey-172h23.2-205	11366	2283aa	ENSDARP00000142207.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000031049.8	si:dkey-172h23.2-202	8511	1375aa	ENSDARP00000031890.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000125258.3	si:dkey-172h23.2-203	3348	942aa	ENSDARP00000107991.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000190735.1	si:dkey-172h23.2-207	1643	307aa	ENSDARP00000151094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000179985.1	si:dkey-172h23.2-206	642	213aa	ENSDARP00000147463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000173048.2	si:dkey-172h23.2-204	275	45aa	ENSDARP00000142386.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000030009.7	si:dkey-172h23.2-201	896	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 896 bps,

Version

ENSDART00000030009.7

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000030009.7 si:dkey-172h23.2-201

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Transcript: ENSDART00000030009.7 si:dkey-172h23.2-201

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