Transcript: ENSDART00000029939.9 RFX2-204

Description

regulatory factor X, 2 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-050227-4]

Location

About this transcript

This transcript has 18 exons, is annotated with 15 domains and features, is associated with 1540 variant alleles and maps to 490 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000029939.9	RFX2-204	3935	734aa	ENSDARP00000039332.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5EAP5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133141.3	RFX2-201	913	234aa	ENSDARP00000121782.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147634.2	RFX2-202	675	170aa	ENSDARP00000112969.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132218.3	RFX2-203	639	189aa	ENSDARP00000113524.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 3,935 bps, Translation length: 734 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5EAP5

Version

ENSDART00000029939.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.