Transcript: ENSDART00000029252.7 aptx-201

Description

aprataxin [Source:ZFIN;Acc:ZDB-GENE-040628-2]

Gene Synonyms

FHA-HIT

Location

About this transcript

This transcript has 8 exons, is annotated with 16 domains and features, is associated with 388 variant alleles and maps to 194 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000029252.7	aptx-201	1303	324aa	ENSDARP00000035368.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M3ALA1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000150862.2	aptx-203	797	247aa	ENSDARP00000125307.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000150568.2	aptx-202	867	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,303 bps, Translation length: 324 residues

Version

ENSDART00000029252.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.