Transcript: ENSDART00000028018.11 meis1a-201

Description

Meis homeobox 1 a [Source:ZFIN;Acc:ZDB-GENE-020122-3]

Location

About this transcript

This transcript has 13 exons, is annotated with 14 domains and features, is associated with 706 variant alleles and maps to 406 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000028018.11	meis1a-201	2185	380aa	ENSDARP00000026780.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SZP3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000150433.2	meis1a-204	942	119aa	ENSDARP00000125440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000146352.3	meis1a-203	760	123aa	ENSDARP00000125224.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000139705.2	meis1a-202	933	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,185 bps, Translation length: 380 residues

Version

ENSDART00000028018.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.