Transcript: ENSDART00000027268.8 otpa-201

Description

orthopedia homeobox a [Source:ZFIN;Acc:ZDB-GENE-070216-1]

Gene Synonyms

otp, otp2, otpb

Location

About this transcript

This transcript has 3 exons, is annotated with 19 domains and features, is associated with 214 variant alleles and maps to 144 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135485.3	otpa-202	1064	332aa	ENSDARP00000122571.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DGA5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000027268.8	otpa-201	2160	319aa	ENSDARP00000015517.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NUE7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,160 bps, Translation length: 319 residues

Version

ENSDART00000027268.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.