Transcript: ENSDART00000025862.11 map3k7-201

Description

mitogen-activated protein kinase kinase kinase 7 [Source:ZFIN;Acc:ZDB-GENE-041001-135]

Gene Synonyms

si:ch211-225h9.1, tak1, zgc:110612

Location

Chromosome 20: 24,151,004-24,183,333 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 26 domains and features, is associated with 370 variant alleles and maps to 240 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000020469.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000025862.11	map3k7-201	4042	551aa	ENSDARP00000006286.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1N6B8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000171184.3	map3k7-207	4689	578aa	ENSDARP00000138323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M3AT57	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000124919.4	map3k7-202	870	211aa	ENSDARP00000107410.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000153075.2	map3k7-203	820	102aa	ENSDARP00000127189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000153331.2	map3k7-205	871	224aa	ENSDARP00000127289.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000153083.2	map3k7-204	915	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000153382.2	map3k7-206	909	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 4,042 bps, Translation length: 551 residues

Version

ENSDART00000025862.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000025862.11 map3k7-201

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Transcript: ENSDART00000025862.11 map3k7-201

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