Transcript: ENSDART00000023806.9 zgc:110319-201

Description

zgc:110319 [Source:ZFIN;Acc:ZDB-GENE-050417-345]

Location

Chromosome 13: 18,354,670-18,359,596 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 11 domains and features, is associated with 341 variant alleles and maps to 231 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000021404.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000023806.9	zgc:110319-201	1554	256aa	ENSDARP00000011966.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A6A3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133931.2	zgc:110319-203	944	234aa	ENSDARP00000116270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000181918.1	zgc:110319-207	357	119aa	ENSDARP00000153755.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000140142.3	zgc:110319-206	773	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000137415.2	zgc:110319-205	768	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000131345.3	zgc:110319-202	755	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000134486.2	zgc:110319-204	608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,554 bps, Translation length: 256 residues

Version

ENSDART00000023806.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000023806.9 zgc:110319-201

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Transcript: ENSDART00000023806.9 zgc:110319-201

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