Transcript: ENSDART00000023453.9 lsm14aa-201

Description

LSM14A mRNA processing body assembly factor a [Source:ZFIN;Acc:ZDB-GENE-040426-1567]

Location

About this transcript

This transcript has 10 exons, is annotated with 25 domains and features, is associated with 5 variant alleles and maps to 196 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000023453.9	lsm14aa-201	2074	443aa	ENSDARP00000009428.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P111	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000125821.3	lsm14aa-202	2105	85aa	ENSDARP00000104913.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000135441.3	lsm14aa-203	892	263aa	ENSDARP00000118954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147093.2	lsm14aa-204	804	268aa	ENSDARP00000114341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,074 bps, Translation length: 443 residues

Version

ENSDART00000023453.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.