Transcript: ENSDART00000022413.6 zhx3b-201

Description

zinc fingers and homeoboxes 3b [Source:ZFIN;Acc:ZDB-GENE-031107-1]

Gene Synonyms

ZHX3, tix1, zgc:110489

Location

Chromosome 23: 2,876,940-2,880,191 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 59 domains and features, is associated with 72 variant alleles and maps to 237 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000019774.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000022413.6	zhx3b-201	3252	1083aa	ENSDARP00000005108.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R0G0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000121899.3	zhx3b-202	3969	1075aa	ENSDARP00000105146.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QQ52	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000165955.2	zhx3b-203	3845	1075aa	ENSDARP00000141318.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QQ52	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000190616.1	zhx3b-204	3723	1075aa	ENSDARP00000148460.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QQ52	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 3,252 bps, Translation length: 1,083 residues

Version

ENSDART00000022413.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000022413.6 zhx3b-201

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Transcript: ENSDART00000022413.6 zhx3b-201

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