Transcript: ENSDART00000022042.10 SCN8A-201

Description

sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]

Location

About this transcript

This transcript has 27 exons, is annotated with 122 domains and features, is associated with 1107 variant alleles and maps to 161 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000022042.10	SCN8A-201	6814	1949aa	ENSDARP00000024690.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9DF53	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000191870.1	SCN8A-202	6804	1949aa	ENSDARP00000155447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 27, Coding exons: 26, Transcript length: 6,814 bps, Translation length: 1,949 residues

Version

ENSDART00000022042.10

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.