Transcript: ENSDART00000020810.7 sdcbp2-201

Description

syndecan binding protein (syntenin) 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3727]

Gene Synonyms

sdcbp, syntenin-a, wu:fc51c03, wu:fk31e01, zgc:55679, zgc:77716

Location

About this transcript

This transcript has 9 exons, is annotated with 15 domains and features, is associated with 775 variant alleles and maps to 279 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000020810.7	sdcbp2-201	2508	299aa	ENSDARP00000016087.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803J6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000189804.1	sdcbp2-203	934	299aa	ENSDARP00000145819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803J6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136496.2	sdcbp2-202	864	267aa	ENSDARP00000116304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QBZ6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,508 bps, Translation length: 299 residues

Version

ENSDART00000020810.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.