Transcript: ENSDART00000020725.10 smarca1-201

Description

SNF2 related chromatin remodeling ATPase 1 [Source:ZFIN;Acc:ZDB-GENE-070705-296]

Location

About this transcript

This transcript has 25 exons, is annotated with 45 domains and features, is associated with 713 variant alleles and maps to 342 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000020725.10	smarca1-201	3843	1036aa	ENSDARP00000023313.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WUY4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144319.2	smarca1-203	770	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000141350.2	smarca1-202	518	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 3,843 bps, Translation length: 1,036 residues

Version

ENSDART00000020725.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.